USC Subscribed Bioinformatics Software

All tools are available to USC researchers free of charge. Click the software icons for more information on features, functions and access instructions.

Software for High-throughput Data Analysis & DNA/Protein Sequence Analysis

 PGS Partek Genomics Suite Advanced statistical analysis and visualization tool for microarray and NGS data
 PartekFlowLogo_2 Partek Flow Web-based application for NGS data alignment, QA/QC, differential expression and variant detection analyses
  CLC Genomics Workbench End-to-end data analysis solutions to a comprehensive set of NGS applications
 galaxyLogoTrimmed Galaxy (local installation) Web-based platform with many cutting-edge tools for genomic research, particularly NGS data
 VectorNTI Vector NTI Advance Comprehensive software package for DNA/ protein sequence analysis and manipulation

Software for Comprehensive Functional Analysis & Advanced Literature/Data Mining

 pathway-analysis-logo Ingenuity Pathway Analysis (IPA) State-of-art pathways, networks and functional analysis tool for gene lists.
  Ingenuity Variant Analysis (IVA) Identify causal variants from human sequencing data
 BIOBASE BIOBASE Comprehensive biomolecule knowledgebase for proteins, transcription factors and gene regulation.
  BaseSpace Correlation Engine Web-based discovery platform for complex biological, clinical and literature data mining
 Oncomine-logo Oncomine World’s largest cancer transcriptome profiles database and data-mining platform
 GENEVESTIGATOR_logo Genevestigator Multi-organism pre-analyzed microarray database and gene expression meta-analysis tool
  Qinsight Advanced literature search engine